Strauss SH, Rottmann WH, Brunner AM, Sheppard LA.  1995.  Genetic engineering of reproductive sterility in forest trees. Molecular Breeding. 1:5-26.

James RR, DiFazio SP, Brunner AM, Strauss SH.  1998.  Environmental effects of genetically engineered woody biomass crops. Biomass & Bioenergy. 14:403-414.

Brunner AM, Mohamed R, Meilan R, Sheppard LA, Rottmann WH, Strauss SH.  1998.  Genetic engineering of sexual sterility in shade trees. Journal of Arboriculture. 24(5):263-273.

Sheppard LA, Brunner AM, Krutovskii KV, Rottmann WH, Skinner JS, Vollmer SS, Strauss SH.  2000.  A DEFICIENS homolog from the dioecious tree Populus trichocarpa is expressed in both female and male floral meristems of its two-whorled, unisexual flowers. Plant Physiology. 124:627-639.

Rottmann WH, Meilan R, Sheppard LA, Brunner AM, Skinner JS, Ma C, Cheng S, Jouanin L, Pilate G, Strauss SH.  2000.  Diverse effects of overexpression of LEAFY and PTLF, a poplar (Populus) homolog of LEAFY/FLORICAULA, in transgenic poplar and Arabidopsis. Plant Journal. 22:235-246.

Skinner JS, Meilan R, Brunner AM, Strauss SH.  2000.  Options for genetic engineering of floral sterility in forest trees. In S.M. Jain & S.C. Minocha (Eds.), Molecular Biology of Woody Plants. :Pp135-153.

Brunner AM, Rottmann WH, Sheppard LA, Krutovskii KV, DiFazio SP, Leonardi S, Strauss SH.  2000.  Structure and expression of duplicate AGAMOUS orthologs in poplar. Plant Molecular Biology. 44(5):619-634.

Brunner AM, Goldfarb B, Busov V, Strauss SH.  2003.  Controlling maturation and flowering for forest tree domestication. In Stewart, C.N. (Eds.), Transgenic Plants: Current Innovations and Future Trends. :Pp9-44.

Campbell MM, Brunner AM, Jones HM, Strauss SH.  2003.  Forestry's Fertile Crescent: The application of biotechnology to forest trees. Plant Biotechnology. 1:141-154.

Brunner AM, Busov V, Strauss SH.  2004.  Poplar genome sequence: functional genomics in an ecologically dominant plant species. Trends in Plant Science. 9:49-56.

Sterky F, Bhalerao R, Unneberg P, Segerman B, Nilsson P, Brunner AM, Charbonnel-Campaa L, Lindvall JJ, Tandre K, Strauss SH et al..  2004.  A populus EST resource for plant functional genomics. American Society of Plant Biologists Newsletter. 38(101):13951-13956.

Brunner AM, Nilsson O.  2004.  Revisiting tree maturation and floral initiation in the poplar functional genomics era. New Phytolologist. 164:43-51.

Strauss SH, Brunner AM, Busov V, Ma C, Meilan R.  2004.  Ten lessons from 15 years of transgenic Populus research. Forestry. 77(5):455-465.

Andersson A, Keskitalo J, Sjodin A, Bhalerao R, Sterky F, Wissel K, Tandre K, Aspeborg H, Moyle R, Ohmiya Y et al..  2004.  A transcriptional timetable of autumn scenescence. Genome Biology. 5:R24.1-R24.13.

Strauss SH, Brunner AM.  2004.  Tree biotechnology in the 21st century: Transforming trees in the light of comparative genomics. In S.H. Strauss and H.D. Bradshaw (Eds.), The BioEngineered Forest: Challenges to Science and Society. :Pp76-97.

Brunner AM, Yakovlev IA, Strauss SH.  2004.  Validating internal controls for quantitative plant gene expression studies. BMC Plant Biolog. 4

Busov V, Brunner AM, Meilan R, Filichkin SA, Ganio L, Gandhi H, Strauss SH.  2005.  Genetic transformation: a powerful tool for dissection of adaptive traits in trees. New Phytologist. 167:9-18.

Wei H, Meilan R, Brunner AM, Skinner JS, Ma C, Strauss SH.  2005.  Transgenic sterility in Populus: Expression properties of the poplar PTLF, Agrobacterium NOS, and two minimal 35S promoters in vegetative tissues. Tree Physiology. 26:401-410.

Filichkin SA, Meilan R, Busov V, Ma C, Brunner AM, Strauss SH.  2006.  Alcohol-inducible gene expression in transgenic Populus. Plant Cell Reports. 25:660-667.

Böhlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O.  2006.  The conserved CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science . 312:1040-1043.

Filichkin SA, DiFazio SP, Brunner AM, Davis JM, Yang ZK, Kalluri UC, Arias RS, Etherington E, Tuskan GA, Strauss SH.  2007.  Efficiency of gene silencing in Arabidopsis: Direct inverted repeats versus transitive RNAi vectors. Plant Biotechnology. 5:615-626.

Wei H, Meilan R, Brunner AM, Skinner JS, Ma C, Gandhi H, Strauss SH.  2007.  Field trial detects incomplete barstar attenuation of vegetative cytotoxicity in Populus trees containing a poplar LEAFY promoter:: barnase sterility transgene. Molecular Breeding. 19:69-85.

Brunner AM, Li J, DiFazio SP, Shevchenko O, Mohamed R, Montgomery B, Elias A, Van Wormer K, Strauss SH.  2007.  Genetic containment of forest plantations. Tree Genetics & Genomes. 3:75-100.

Li J, Brunner AM, Shevchenko O, Meilan R, Ma C, Skinner JS, Strauss SH.  2008.  Efficient and stable transgene suppression via RNAi in field-grown poplars. Transgenic Research. 17:679-694.

Busov V, Brunner AM, Strauss SH.  2008.  Genes for control of plant stature and form. New Phytologist. 177(3):589-607.

Li J, Brunner AM, Meilan R, Strauss SH.  2008.  Matrix attachment region elements have small and variable effects on transgene expression and stability in field-grown Populus. Plant Biotechnology Journal. 6:887-896.

Li J, Brunner AM, Meilan R, Strauss SH.  2009.  Stability of transgenes in trees: expression of two reporter genes in poplar over three field seasons. Tree Physiology. 29:299-312.

Brunner AM, Li J, DiFazio S, Shevchenko O, Mohamed R, Montgomery B, Elias A, Van Wormer K, DiFazio SP, Strauss SH.  2010.  Genetic containment of forest plantations. In: Forests and Genetically Modified Trees. :Pp.35-76.

Dharmawardhana P, Brunner AM, Strauss SH.  2010.  Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa. BMC Genomics. 11:150.

Dharmawardhana P, Brunner AM, Strauss SH.  2010.  Poplar as a tree model for horticulture and beyond: A case study of genome-scale changes in gene expression during bud entry and release from dormancy. Acta Hort. (ISHS). 859:43-47.

Mohamed R, Wang C-T, Ma C, Shevchenko O, Dye SJ, Puzey JR, Etherington E, Sheng X, Meilan R, Strauss SH et al..  2010.  Populus CEN/TFL1 regulates first onset of flowering, axillary meristem identity and dormancy release in Populus. The Plant Journal. 62:674-688.

Hsu C-Y, Adams JP, Kim H, No K, Ma C, Strauss SH, Drnevich J, Vandervelde L, Ellis JD, Rice BM et al..  2011.  FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. PNAS. 108(26):10756-10761.

Yuceer C, Hsu C-Y, Brunner AM, Strauss SH.  2011.  Regulation of Flowering Time in Poplar. Genetics, Genomics, and Breeding of Poplar, C.P. Joshi, S. DiFazio, and C. Kole (eds.). :pp.272-303.

Rodgers-Melnick E, Mane SP, Dharmawardhana P, Slavov GT, Crasta OR, Strauss SH, Brunner AM, DiFazio SP.  2012.  Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. Genome Research. 22:95–105.

Elorriaga E, Meilan R, Ma C, Skinner JS, Etherington E, Brunner AM, Strauss SH.  2014.  A tapetal ablation transgene induces stable male sterility and slows field growth in Populus. Tree Genetics & Genomes. 10:1583–1593.

Klocko A, Brunner AM, Huang J, Meilan R, Lu H, Ma C, Morel A, Zhao D, Ault K, Dow M et al..  2016.  Containment of transgenic trees by suppression of LEAFY. Nature Biotechnology. 34:918–922.

Klocko A, Borejsza-Wysocka E, Brunner AM, Shevchenko O, Aldwinckle H, Strauss SH.  2016.  Transgenic suppression of AGAMOUS genes in apple reduces fertility and increases floral attractiveness. PLOS One. 11(8):e0159421.

Klocko A, Lu H, Magnuson A, Brunner AM, Ma C, Strauss SH.  2018.  Phenotypic Expression and Stability in a Large-Scale Field Study of Genetically Engineered Poplars Containing Sexual Containment Transgenes. Front. Bioeng. Biotechnol. 6:100

Lu H, Klocko A, Brunner AM, Ma C, Magnuson A, Howe GT, An X, Strauss SH.  2018.  RNA interference suppression of AGAMOUS and SEEDSTICK alters floral organ identity and impairs floral organ determinacy, ovule differentiation, and seed-hair development in Populus. New Phytologist.

Klocko A, Brunner AM, Ma C, Etherington E, Rosenstiel K, Magnuson A, Taylor BJ, Cappellazzi J, Lockwood T, Covarrubias N et al..  2020.  RNAi of AGAMOUS genes in sweetgum alters reproductive organ identity and decreases fruit persistence. Plant Direct.

Goralogia GS, Howe GT, Brunner AM, Helliwell E, Nagle M, Ma C, Goddard A, Magnuson A, Klocko A, Lu H et al..  2021.  Overexpression of SHORT VEGETATIVE PHASE-LIKE (SVL) in Populus delays onset and reduces abundance of flowering in field-grown trees. Horticulture Research.